18#ifndef __FINLEY_NODEFILE_H__
19#define __FINLEY_NODEFILE_H__
26#include <escript/Distribution.h>
29#include <paso/Coupler.h>
31#ifdef ESYS_HAVE_TRILINOS
32#include <trilinoswrap/types.h>
107 const IndexVector& dofDistribution);
113 const IndexVector& dofDistribution,
114 const IndexVector& nodeDistribution);
118 const IndexVector& distribution);
120 void copyTable(index_t offset, index_t idOffset, index_t dofOffset,
142 dim_t
prepareLabeling(
const std::vector<short>& mask, IndexVector& buffer,
143 IndexVector& distribution,
bool useNodes);
195#ifdef ESYS_HAVE_TRILINOS
196 esys_trilinos::const_TrilinosMap_ptr trilinosRowMap;
197 esys_trilinos::const_TrilinosMap_ptr trilinosReducedRowMap;
198 esys_trilinos::const_TrilinosMap_ptr trilinosColMap;
199 esys_trilinos::const_TrilinosMap_ptr trilinosReducedColMap;
Data represents a collection of datapoints.
Definition Data.h:64
Definition finley/src/NodeFile.h:42
std::pair< index_t, index_t > getGlobalDOFRange() const
Definition finley/src/NodeFile.cpp:231
dim_t getNumReducedNodes() const
returns the number of reduced order FEM nodes (on this rank)
Definition finley/src/NodeFile.h:261
double * Coordinates
Coordinates[INDEX2(k,i,numDim)] is the k-th coordinate of node i.
Definition finley/src/NodeFile.h:175
~NodeFile()
destructor
Definition finley/src/NodeFile.cpp:122
void updateTagList()
Definition finley/src/NodeFile.h:326
NodeMapping reducedNodesMapping
Definition finley/src/NodeFile.h:157
index_t getLastReducedNode() const
Definition finley/src/NodeFile.h:241
void copyTable(index_t offset, index_t idOffset, index_t dofOffset, const NodeFile *in)
Definition finley/src/NodeFile.cpp:285
const index_t * borrowTargetReducedDegreesOfFreedom() const
Definition finley/src/NodeFile.h:321
void createDOFMappingAndCoupling(bool reduced)
Definition finley/src/NodeFile.cpp:772
dim_t getNumDegreesOfFreedomTargets() const
returns the number of degrees of freedom targets (own and shared)
Definition finley/src/NodeFile.h:276
index_t * globalNodesIndex
assigns each local node a global unique ID in a dense labeling
Definition finley/src/NodeFile.h:183
index_t getGlobalNumReducedNodes() const
Definition finley/src/NodeFile.h:246
void freeTable()
empties the node table and frees all memory
Definition finley/src/NodeFile.cpp:162
index_t * globalReducedNodesIndex
Definition finley/src/NodeFile.h:181
escript::Distribution_ptr degreesOfFreedomDistribution
Definition finley/src/NodeFile.h:188
void gather(const index_t *index, const NodeFile *in)
Definition finley/src/NodeFile.cpp:321
dim_t createDenseDOFLabeling()
Definition finley/src/NodeFile.cpp:525
index_t * globalDegreesOfFreedom
Definition finley/src/NodeFile.h:173
escript::JMPI MPIInfo
MPI information.
Definition finley/src/NodeFile.h:160
const index_t * borrowGlobalReducedNodesIndex() const
Definition finley/src/NodeFile.h:251
void allocTable(dim_t numNodes)
allocates the node table within this node file to hold numNodes nodes.
Definition finley/src/NodeFile.cpp:127
int status
Definition finley/src/NodeFile.h:209
index_t * globalReducedDOFIndex
Definition finley/src/NodeFile.h:178
escript::Distribution_ptr reducedNodesDistribution
Definition finley/src/NodeFile.h:187
std::pair< index_t, index_t > getGlobalIdRange() const
Definition finley/src/NodeFile.cpp:226
index_t getFirstNode() const
Definition finley/src/NodeFile.h:216
dim_t createDenseNodeLabeling(IndexVector &nodeDistribution, const IndexVector &dofDistribution)
Definition finley/src/NodeFile.cpp:588
void print() const
Definition finley/src/NodeFile.cpp:196
std::pair< index_t, index_t > getGlobalNodeIDIndexRange() const
Definition finley/src/NodeFile.cpp:236
dim_t getGlobalNumNodes() const
Definition finley/src/NodeFile.h:226
escript::Distribution_ptr reducedDegreesOfFreedomDistribution
Definition finley/src/NodeFile.h:189
index_t getFirstReducedNode() const
Definition finley/src/NodeFile.h:236
NodeMapping degreesOfFreedomMapping
Definition finley/src/NodeFile.h:147
index_t getLastNode() const
Definition finley/src/NodeFile.h:221
const IndexVector & borrowDegreesOfFreedomTarget() const
Definition finley/src/NodeFile.h:296
const IndexVector & borrowNodesTarget() const
Definition finley/src/NodeFile.h:286
void scatter(const index_t *index, const NodeFile *in)
Definition finley/src/NodeFile.cpp:310
dim_t getNumReducedDegreesOfFreedom() const
returns the number of reduced order degrees of freedom (on this rank)
Definition finley/src/NodeFile.h:271
dim_t getNumDegreesOfFreedom() const
returns the number of degrees of freedom (on this rank)
Definition finley/src/NodeFile.h:266
index_t * degreesOfFreedomId
Definition finley/src/NodeFile.h:204
void setCoordinates(const escript::Data &newX)
copies the array newX into this->coordinates
Definition finley/src/NodeFile.cpp:242
void createNodeMappings(const IndexVector &indexReducedNodes, const IndexVector &dofDistribution, const IndexVector &nodeDistribution)
Definition finley/src/NodeFile.cpp:1004
NodeMapping reducedDegreesOfFreedomMapping
Definition finley/src/NodeFile.h:148
dim_t createDenseReducedLabeling(const std::vector< short > &reducedMask, bool useNodes)
Definition finley/src/NodeFile.cpp:702
NodeMapping nodesMapping
Definition finley/src/NodeFile.h:146
int * Tag
Tag[i] is the tag of node i.
Definition finley/src/NodeFile.h:166
const IndexVector & borrowReducedDegreesOfFreedomTarget() const
Definition finley/src/NodeFile.h:301
const index_t * borrowTargetReducedNodes() const
Definition finley/src/NodeFile.h:311
index_t * reducedDegreesOfFreedomId
Definition finley/src/NodeFile.h:205
dim_t getNumReducedDegreesOfFreedomTargets() const
returns the number of reduced degrees of freedom targets (own and shared)
Definition finley/src/NodeFile.h:281
index_t * reducedNodesId
Definition finley/src/NodeFile.h:203
dim_t numNodes
number of nodes
Definition finley/src/NodeFile.h:151
void assignMPIRankToDOFs(std::vector< int > &mpiRankOfDOF, const IndexVector &distribution)
Definition finley/src/NodeFile.cpp:438
const index_t * borrowTargetNodes() const
returns the mapping from local nodes to a target
Definition finley/src/NodeFile.h:306
const index_t * borrowTargetDegreesOfFreedom() const
Definition finley/src/NodeFile.h:316
const IndexVector & borrowReducedNodesTarget() const
Definition finley/src/NodeFile.h:291
const index_t * borrowGlobalNodesIndex() const
Definition finley/src/NodeFile.h:231
dim_t prepareLabeling(const std::vector< short > &mask, IndexVector &buffer, IndexVector &distribution, bool useNodes)
Definition finley/src/NodeFile.cpp:464
index_t * Id
Id[i] is the unique ID number of FEM node i.
Definition finley/src/NodeFile.h:164
void setTags(int newTag, const escript::Data &mask)
set tags to newTag where mask > 0
Definition finley/src/NodeFile.cpp:267
void gather_global(const index_t *index, const NodeFile *in)
Definition finley/src/NodeFile.cpp:329
std::pair< index_t, index_t > getDOFRange() const
Definition finley/src/NodeFile.cpp:215
dim_t getNumNodes() const
returns the number of FEM nodes (on this rank)
Definition finley/src/NodeFile.h:256
int numDim
number of spatial dimensions
Definition finley/src/NodeFile.h:162
std::vector< int > tagsInUse
vector of tags which are actually used
Definition finley/src/NodeFile.h:168
escript::Distribution_ptr nodesDistribution
MPI distribution of nodes.
Definition finley/src/NodeFile.h:186
Definition AbstractContinuousDomain.cpp:23
boost::shared_ptr< Distribution > Distribution_ptr
Definition Distribution.h:26
boost::shared_ptr< JMPI_ > JMPI
Definition EsysMPI.h:76
void setValuesInUse(const int *values, dim_t numValues, std::vector< int > &valuesInUse, escript::JMPI mpiinfo)
Definition finley/src/Util.cpp:343
A suite of factory methods for creating various finley domains.
Definition finley/src/Assemble.h:32
boost::shared_ptr< Connector > Connector_ptr
Definition Coupler.h:39
Definition finley/src/NodeMapping.h:30
std::vector< index_t > target
target[i] defines the target of FEM node i=0,...,numNodes-1
Definition finley/src/NodeMapping.h:82
std::vector< index_t > map
maps the target nodes back to the FEM nodes: target[map[i]]=i
Definition finley/src/NodeMapping.h:84
dim_t getNumTargets() const
returns the number of target nodes (number of items in the map array)
Definition finley/src/NodeMapping.h:79